species:   Scscl
pid:       PID1656
parent:    Ssc-milR-132
paralog:   
locus:     NW_001820827.1:423780-423871
matures:   ['UGAUGAGGUAGAGCUUGAGGUU', 'ACACUUUGAUCUCUUUUGUGAUGA']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820827.1:423780-423871

2 out of bounds
10 alignments
10 proper strand
8 stranded perfect matches

               *********************                      **********************            
CCUAAUUUGCACACACUUUGAUCUCUUUUGUGAUGAUGUUCCCUGGAAAGCAGAAACAUCUGAUGAGGUAGAGCUUGAGGUUGCCGAUUUCA
...((((.(((...(((((((.(((((((((.(.((((((..(((.....))).))))))).)))))..)))).)))))))))).))))...
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGGUU---------- l=22 a=0 c
------------ACACUUUGAUCUCUUUUGUGAUGA-------------------------------------------------------- l=24 a=0 c*
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGG------------ l=20 a=2 ma
-----------------UUGAUCUCUUUUGUGAUGA-------------------------------------------------------- l=19 a=0 ma*

------------------------------------------------------------UGAUGAGGUAGAGCUUGAG------------- l=19 a=2 
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGG------------ l=20 a=2 (ma)
------------------------------------------------------------UGAUGAGGUAGAGCUUGAGGUUG--------- l=23 a=1 
---------------------------------UGAUGUUCCCUGGAAAGCAGAAAC----------------------------------- l=24 a=1 
------------------------------aGAUGAUGUUCCCUGGAAAGCA---------------------------------------- l=22 a=1 
--------------------------UUUGUGAUGAUGUUCCCUGGAAA------------------------------------------- l=23 a=1 
---------------------UCUCUUUUGUGAUGAUGUUCCa------------------------------------------------- l=22 a=1 
--UAAUUUGCACACACUUUGA----------------------------------------------------------------------- l=19 a=1 

mb-01111
ax-1011011
ku-01
ss-101111111100
fn-111
